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Sequenom sequenom massarray genotyping platform
Sequenom Massarray Genotyping Platform, supplied by Sequenom, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/sequenom+genotyping+platform/massarray+platform/pmc12593843-82-22-22
Average 86 stars, based on 1 article reviews
sequenom massarray genotyping platform - by Bioz Stars, 2026-09
86/100 stars

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Related Articles

Mass Spectrometry:

Article Title: Genetic association and gene expression studies suggest that genetic variants in the SYNE1 and TNF genes are related to menstrual migraine
Article Snippet: .. The SNPs were tested by using the Sequenom genotyping platform (Sequenom ® , San Diego, CA, USA), which uses MALDI-TOF mass spectroscopy and MassARRAY technology with an iPlex system. .. Primers for polymerase chain reaction (PCR) amplification and single base extension were designed by Sequenom Assay Design 3.1 software (Sequenom, San Diego, CA, USA) according to the manufacturer’s instructions (Additional file ).

other:

Article Title: The Evidence for Association of ATP2B2 Polymorphisms with Autism in Chinese Han Population
Article Snippet: All SNPs were genotyped using the Sequenom genotyping platform.

Selection:

Article Title: Common polymorphisms in human lysyl oxidase genes are not associated with the adolescent idiopathic scoliosis phenotype
Article Snippet: .. After reiterations to accommodate the Sequenom Genotyping platform, final selection included 112 SNPs. ..

Variant Assay:

Article Title: Dosage Transmission Disequilibrium Test (dTDT) for Linkage and Association Detection
Article Snippet: The resulting genotype spectra were analyzed with Sequenom SpectroTYPER software v3.4. .. Because variant rs11583322 did not work well with the Sequenom genotyping platform, we used the PrimerPicker software to design the assay and followed the protocol described in KASPar SNP Genotyping System manual to run PCR reaction with an ABI GeneAmp PCR System 9700 . .. Genotypes were accessed using an ABI 7900 HT Fast Real-Time PCR system.

Software:

Article Title: Dosage Transmission Disequilibrium Test (dTDT) for Linkage and Association Detection
Article Snippet: The resulting genotype spectra were analyzed with Sequenom SpectroTYPER software v3.4. .. Because variant rs11583322 did not work well with the Sequenom genotyping platform, we used the PrimerPicker software to design the assay and followed the protocol described in KASPar SNP Genotyping System manual to run PCR reaction with an ABI GeneAmp PCR System 9700 . .. Genotypes were accessed using an ABI 7900 HT Fast Real-Time PCR system.

Polymerase Chain Reaction:

Article Title: Dosage Transmission Disequilibrium Test (dTDT) for Linkage and Association Detection
Article Snippet: The resulting genotype spectra were analyzed with Sequenom SpectroTYPER software v3.4. .. Because variant rs11583322 did not work well with the Sequenom genotyping platform, we used the PrimerPicker software to design the assay and followed the protocol described in KASPar SNP Genotyping System manual to run PCR reaction with an ABI GeneAmp PCR System 9700 . .. Genotypes were accessed using an ABI 7900 HT Fast Real-Time PCR system.



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Fig. 2. Workflow outlining the steps used in marker identification and selection of SNP-plex for Sequenom iPLEX MassARRAY® <t>genotyping.</t> The remaining number of SNPs after each step are listed between the boxes.
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Summaries of nutrigenetics studies’ characteristics and key findings in endurance athletes.

Journal: Nutrients

Article Title: Towards Precision Sports Nutrition for Endurance Athletes: A Scoping Review of Application of Omics and Wearables Technologies

doi: 10.3390/nu16223943

Figure Lengend Snippet: Summaries of nutrigenetics studies’ characteristics and key findings in endurance athletes.

Article Snippet: Guest et al., 2022 [ ] , Whole-plot complete randomized block, double-blinded, placebo-controlled design with 3 supplementation days, 1 week apart; saliva sample time point: before the intervention , 100 competitive male athletes; HTR2A rs6313 CC genotype (mean age: 24 ± 4 years, VO 2 max: 49 ± 8 mL kg −1 min −1 ), CT genotype (mean age: 25 ± 5 years, VO 2 max: 47 ± 12 mL kg −1 min −1 ), TT genotype (mean age: 25 ± 5 years, VO 2 max: 44 ± 12 mL kg −1 min −1 ) , Genotyping (Sequenom MassArray platform, Sequenom Inc., San Diego, CA, USA), target SNPs: HTR2A rs6313, CYP1A2 rs762551; saliva , Participants received placebo or caffeine (2 mg/kg or 4 mg/kg) before a 10 km cycling time trial. , 4 mg/kg caffeine ↑ performance in individuals with both the HTR2A CC and CYP1A2 AA genotypes. Among CYP1A2 AA individuals, HTR2A CC genotypes outperformed T-allele carriers. No performance differences in CYP1A2 C allele carriers based on HTR2A genotype..

Techniques: Control, Blocking Assay

Fig. 2. Workflow outlining the steps used in marker identification and selection of SNP-plex for Sequenom iPLEX MassARRAY® genotyping. The remaining number of SNPs after each step are listed between the boxes.

Journal: Aquaculture

Article Title: Transcriptome-derived SNP markers for population assignment of sandfish, Holothuria (Metriatyla) scabra

doi: 10.1016/j.aquaculture.2023.740261

Figure Lengend Snippet: Fig. 2. Workflow outlining the steps used in marker identification and selection of SNP-plex for Sequenom iPLEX MassARRAY® genotyping. The remaining number of SNPs after each step are listed between the boxes.

Article Snippet: Of these, primers were successfully designed for only 144 loci, which were used to genotype 162 sandfish on the Sequenom genotyping platform.

Techniques: Marker, Selection